| Copyright | (c) Fabricio Olivetti 2021 - 2024 |
|---|---|
| License | BSD3 |
| Maintainer | fabricio.olivetti@gmail.com |
| Stability | experimental |
| Portability | ConstraintKinds |
| Safe Haskell | Safe-Inferred |
| Language | Haskell2010 |
Algorithm.SRTree.Opt
Description
Functions to optimize the parameters of an expression.
Synopsis
- minimizeNLL :: Distribution -> Maybe Double -> Int -> SRMatrix -> PVector -> Fix SRTree -> PVector -> (PVector, Double)
- minimizeNLLNonUnique :: Distribution -> Maybe Double -> Int -> SRMatrix -> PVector -> Fix SRTree -> PVector -> (PVector, Double)
- minimizeNLLWithFixedParam :: Distribution -> Maybe Double -> Int -> SRMatrix -> PVector -> Fix SRTree -> Int -> PVector -> PVector
- minimizeGaussian :: Int -> SRMatrix -> PVector -> Fix SRTree -> PVector -> (PVector, Double)
- minimizeBinomial :: Int -> SRMatrix -> PVector -> Fix SRTree -> PVector -> (PVector, Double)
- minimizePoisson :: Int -> SRMatrix -> PVector -> Fix SRTree -> PVector -> (PVector, Double)
- estimateSErr :: Distribution -> Maybe Double -> SRMatrix -> PVector -> PVector -> Fix SRTree -> Int -> Maybe Double
Documentation
minimizeNLL :: Distribution -> Maybe Double -> Int -> SRMatrix -> PVector -> Fix SRTree -> PVector -> (PVector, Double) #
minimizes the negative log-likelihood of the expression
minimizeNLLNonUnique :: Distribution -> Maybe Double -> Int -> SRMatrix -> PVector -> Fix SRTree -> PVector -> (PVector, Double) #
minimizes the likelihood assuming repeating parameters in the expression
minimizeNLLWithFixedParam :: Distribution -> Maybe Double -> Int -> SRMatrix -> PVector -> Fix SRTree -> Int -> PVector -> PVector #
minimizes the function while keeping the parameter ix fixed (used to calculate the profile)
minimizeGaussian :: Int -> SRMatrix -> PVector -> Fix SRTree -> PVector -> (PVector, Double) #
minimizes using Gaussian likelihood
minimizeBinomial :: Int -> SRMatrix -> PVector -> Fix SRTree -> PVector -> (PVector, Double) #
minimizes using Binomial likelihood